|
Summary of putative opossum cytokine genes including search strategy, best hit, predicted glycosylation sites and signal peptide information. |
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| Identity |
Search Strategy |
Best Hit |
Number of predicted glycosylation sites |
Signal peptide identified |
||
|
|
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| Cytokines |
reference |
e-value |
N-gly |
O-gly |
opossum |
|
|
|
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| Interleukin 2 |
synteny |
- |
- |
1 |
1 |
Yes |
| Interleukin 4 |
synteny |
- |
- |
2 |
0 |
Yes |
| Interleukin 5 |
BLAST |
AAD37462.1 |
4e-028 |
1 |
0 |
Yes |
| Interleukin 6 |
BLAST |
NP_112445.1 |
0.081 |
2 |
3 |
Yes |
| Interleukin 10 |
BLAST |
AAD01799.1 |
3e-011 |
2 |
0 |
Yes |
| Interleukin 12A |
BLAST |
NP_032377.1 |
9e-006 |
1 |
1 |
No |
| Interleukin 13 |
synteny/HMMER |
- |
- |
0 |
0 |
No |
| Interleukin 19 |
BLAST |
NP_001009940.1 |
3e-008 |
3 |
0 |
Yes |
| Interleukin 20 |
BLAST |
NP_061194.2 |
1e-004 |
0 |
0 |
Yes |
| Interleukin 21 |
BLAST |
Q9HBE4 |
0.088 |
2 |
1 |
Yes |
| Interleukin 22 |
BLAST |
NP_065386.1 |
3e-005 |
1 |
0 |
Yes |
| Interleukin 24 |
BLAST |
NP_006841.1 |
2e-006 |
2 |
0 |
Yes |
| Interleukin 26 |
BLAST |
NP_060872.1 |
3e-009 |
0 |
0 |
No |
| Interferon-γ |
synteny |
- |
- |
2 |
0 |
Yes |
| Type 1 Interferons |
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| IFN-α (7 genes) |
BLAST |
AAO37656.1 |
1e-019 to 9e-974 (range) |
0–4 (range) |
0 |
Yes |
| IFN-β |
BLAST |
AAO37656.1 |
2 |
0 |
Yes |
|
| IFN-κ |
BLAST |
AAO37656.1 |
1 |
0 |
No |
|
| Cytokine receptors |
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| Common cytokine receptor gamma chain (IL-2Rγ) |
BLAST |
NP_000197.1 |
9e-019 |
6 |
3 |
No |
| Interferon-γ receptor 2 |
BLAST |
NP_005525.2 |
3e-018 |
3 |
2 |
Yes |
| T cell surface receptors |
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| CD4 |
BLAST |
NP_000607.1 |
5e-009 |
4 |
0 |
Yes |
| CD8 |
BLAST |
Q60965 |
9e-012 |
1 |
8 |
Yes |
Wong et al. Immunome Research 2006 2:4 doi:10.1186/1745-7580-2-4 |
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