Table 2

Individual tool AROC values and sensitivity data for HLA-B*3501 using binders and nonbinders from the community binding resource.
Tool
 AROC
 0.99 Specificity
 0.95 Specificity




Rank
 Sensitivity
 Threshold
 Rank
 Sensitivity
 Threshold
ARB Matrix
 0.849
 1
 0.242
 12.890
 1
 0.422
 296.090
Bimas
 0.808
 7
 0.047
 60.000
 8
 0.166
 24.000
NetMHC 2.0 Matrix
 0.789
 2
 0.137
 32.386
 2
 0.336
 28.404
HLA Ligand
 0.786
 8
 0.043
 162.000
 4
 0.237
 145.000
Rankpep
 0.769
 5
 0.071
 124.000
 3
 0.256
 107.000
Logistic Regression
 0.764
 11
 0.024
 0.655
 11
 0.123
 0.259
SVMHC SYFPEITHI
 0.742
 3
 0.118
 0.680
 6
 0.204
 0.420
SVMHC MHCPEP
 0.733
 8
 0.043
 1.560
 6
 0.204
 1.140
MHCPred (position only)
 0.692
 6
 0.057
 140.600
 9
 0.156
 210.860
MHCPred (interactions)
 0.683
 4
 0.090
 52.240
 5
 0.209
 179.470
Predep
 0.587
 10
 0.038
 -6.020
 10
 0.128
 -5.090

For details, see the caption for Table 1.

Trost et al. Immunome Research 2007 3:5   doi:10.1186/1745-7580-3-5